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without Replicate
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3
votes
6
replies
4.5k
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Analyzing data without replicates using DiffBind
diffbind
bioconductor
differential binding analysis
without replicate
chipseq
6.5 years ago
Hesh
▴ 10
1
vote
6
replies
2.7k
views
Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray data?
limma
edger
timecourse
without replicate
voom
written 7.5 years ago by
Camila Orellana
▴ 10
3
votes
6
replies
1.3k
views
Question about edgeR usage with one case and multiple controls
edgeR
differential expression
without replicate
7.9 years ago
gavin.oliver
• 0
0
votes
3
replies
1.4k
views
to call differential peaks among 4 peaksets all together using DiffBind
diffbind
without replicate
updated 8.2 years ago by
Gord Brown
▴ 650 • written 8.2 years ago by
yiweihe
• 0
4
votes
5
replies
2.5k
views
edgeR- DE analysis with no replicates
edger
differential gene expression
without replicate
nested design
help
updated 7.9 years ago by
Aaron Lun
★ 28k • written 7.9 years ago by
knipehf
• 0
1
vote
5
replies
3.0k
views
steps to get up and down regulated genes using DESeq2
deseq2
without replicate
no replicates
updated 6.0 years ago by
Michael Love
42k • written 6.0 years ago by
Tony
• 0
0
votes
3
replies
1.0k
views
time-series, no replicates, no control groupe
deseq2
time-series
without replicate
updated 5.8 years ago by
Michael Love
42k • written 5.8 years ago by
bahlv
• 0
0
votes
10
replies
4.7k
views
DESeq2 analysis without Replicate
without Replicate
deseq2
updated 2.8 years ago by
Michael Love
42k • written 8.4 years ago by
Sushant Pawar
• 0
1
vote
1
reply
1.5k
views
edgeR for without Replicate
edger
without replicate
updated 8.4 years ago by
Aaron Lun
★ 28k • written 8.4 years ago by
Sushant Pawar
• 0
2
votes
7
replies
2.8k
views
edgeR for with no Replicate
edger
without replicate
updated 8.4 years ago by
Yunshun Chen
▴ 840 • written 8.4 years ago by
Sushant Pawar
• 0
0
votes
1
reply
621
views
BSmooth does give DMRs without no replicate data sets
bsmooth
without replicate
dimension
5.8 years ago
nilaycan
• 0
11 results • Page
1 of 1
Recent ...
Replies
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Marcel Ramos
690
`BiocManager` does not install local packages. It only installs Bioconductor, CRAN, and GitHub ones. You should install local packages w…
Comment: error running enricher from clusterprofiler
by
Yael
• 0
It worked!!! Thanks alot, i think something in the gene_list wasnt right... Thanks agian
Comment: Create protein sequences including variants from a VCF file
by
Yun
• 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization?
by
Daniel
• 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Votes
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
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